In a large bowl, cream coconut oil, molasses, and coconut sugar together for 1 minute or until creamy, then add eggs and vanilla.
In a medium-sized bowl, combine almond and coconut flour, ginger, cinnamon, baking soda, cloves, nutmeg, and salt. Slowly pour into the large bowl and stir until evenly combined. Place dough into the refrigerator and chill for 30 minutes or until cold.
Preheat the oven to 350 degrees. Line an edged baking sheet with parchment paper, set aside.
Place the additional 3 tablespoons of coconut sugar into a small bowl or plate and scoop the dough with a spoon and form into 1-1/2-inch balls and roll into the sugar. Place rolled dough onto the prepared baking sheet and slightly press the balls down.
Bake the cookies in the preheated oven for 10 to 12 minutes or until the tops start to crackle. Cool completely on the baking sheet before removing.